rs26936047 SNP Detail

Summary

• ID
  rs26936047
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:67856308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGACCCTT ATTCATACTC
  CTACCGAGTT AGGCTCATTT GGTCTCTGGA GGAGCTTTAT CTGAGCTCTT ACACCCATGC
  CAGTTCCTGA GGCTCAGGAA TGAGGCCCAG ATCTGCCACC ATCCTGGGGC GGGTGGTGCC
  TGGCCACACT CTTGCCGCTA TTCCCACTGC CTCTCAGGCG CTACCAGGTC AGCGTCTCAC
  Y
  GTCCCTGAGG CATCAAATCA TGGTTGCTCA AGGTCTCACC ATTGAAGCCG ATCACAGCCT
  GAAGCTCCAG TTCTGCTACA TCCAGCTCGG GTAAAACTTG TTCTTCCATC CTGGAGAGTT
  TCAGCTCATT GATTCTTCAA CTCCAGGGTG CAGCGTCTCC TGGTCGTCAT GGTAACTGGC
  GCACGCATGC GTGCTAGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37170379	NES08496260	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26936047					SNP	T	T	T	T	C	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37170379	NES08496260	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67856308 () rs orientation: forward

Symbol	Name	Function Class
Cfap52	cilia and flagella associated protein 52	within coordinates
Cpgi3072	CpG island 3072	within coordinates
Cpgi3073	CpG island 3073	842 bp proximal
Rr449568	regulatory region 449568	1166 bp distal
Rr449569	regulatory region 449569	150 bp proximal
Rr449570	regulatory region 449570	1009 bp proximal
Stx8	syntaxin 8	929 bp upstream
Tssr102288	transcription start site region 102288	960 bp upstream
Tssr108559	transcription start site region 108559	124 bp downstream
Tssr108560	transcription start site region 108560	149 bp downstream