rs26936048 SNP Detail

Summary

• ID
  rs26936048
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:67855979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACGAAGAC TCAAGAGTTA
  ATGCCAGGAG CGCTTAAACC TTTATTTACT CTGTAATCGT TCCGCACCGC ATCCTTTCAA
  CGGTAAAGCT TTCAGGCACT ACATTCGTTT TAAAAAATCA ATTTTCCCCC TAAAATTTAA
  CTCCTTGCCT TTTCGCTACA CGCCAAACAC GACCCCCAAT CACAGCATTT CTCTCTCAAT
  R
  TTTACCACGA CAGTCACAAA TAAAGTGTGA GCACCACAAG AAGGCCCCTC CAGAATTAAA
  AAGGTTTCTC CCTTAATGTC CTACTTCCCT TCTATCCTGG TCTTAAACCT TTGAGTTCTT
  ACTTTGGGAA AGACCCTTAT TCATACTCCT ACCGAGTTAG GCTCATTTGG TCTCTGGAGG
  AGCTTTATCT GAGCTCTTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37170380	NES08496259	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26936048					SNP	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37170380	NES08496259	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67855979 () rs orientation: forward

Symbol	Name	Function Class
Cfap52	cilia and flagella associated protein 52	within coordinates
Cpgi3072	CpG island 3072	281 bp proximal
Cpgi3073	CpG island 3073	1171 bp proximal
Rr449568	regulatory region 449568	837 bp distal
Rr449569	regulatory region 449569	479 bp proximal
Rr449570	regulatory region 449570	1338 bp proximal
Stx8	syntaxin 8	1258 bp upstream
Tssr102288	transcription start site region 102288	1289 bp upstream
Tssr108559	transcription start site region 108559	453 bp downstream
Tssr108560	transcription start site region 108560	478 bp downstream