rs26936896 SNP Detail

Summary

• ID
  rs26936896
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70057269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCCAGGCT CTTGACTTGC
  CAACTCATGA TGCCCATCTG AAACAGAGTG AAGGAGGCCT CGATAGCTAA TTGGTTGGTC
  GTAGTCAGAT GATGAGGACT CGTGCTAGGA ATGTGCTTGA GAGTTAATGA TGAGATATGG
  ATGATTCTTG GAAATATATA GGCAGGAAGT AAATGAAGAT GCGGGGCATA AGATAAAACT
  R
  CAAGCTGTTC TTTTTGGTCA ATCCCTCACC CCAACACTCT TAAAATGAGG AAGTCACAAG
  AGCTCCCAGA AAGAGGAATG GAAGAAGGCA CACCCTTGAG GACAAGTGCA GAGTTAGTCC
  CAAACCCAAC TCCACCCCAT AGCCTTGTCA CGTGCACCAA TCACCATCTG CTCAGTATTA
  TTTATGGTTA AGACTTGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37166337	NES08479133	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A		G	G	G	G		A
ss323733881	CHEV_11_69979945	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs26936896					SNP	G	G	G	G	G	G	G	G	A	A	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37166337	NES08479133	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70057269 () rs orientation: forward

Symbol	Name	Function Class
Clec10a	C-type lectin domain family 10, member A	180 bp upstream
Rr251315	regulatory region 251315	within coordinates
Tssr102659	transcription start site region 102659	205 bp upstream
Tssr102660	transcription start site region 102660	253 bp upstream
Tssr102661	transcription start site region 102661	323 bp upstream
Tssr102662	transcription start site region 102662	741 bp upstream
Tssr102663	transcription start site region 102663	759 bp upstream