rs26936898 SNP Detail

Summary

• ID
  rs26936898
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70057129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACTCAGAAA CAACAACCTG CAGTTCAGGA CTTGAGCTGG
  GGCCCAGGCT CTTGACTTGC CAACTCATGA TGCCCATCTG AAACAGAGTG AAGGAGGCCT
  Y
  GATAGCTAAT TGGTTGGTCG TAGTCAGATG ATGAGGACTC GTGCTAGGAA TGTGCTTGAG
  AGTTAATGAT GAGATATGGA TGATTCTTGG AAATATATA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37166339	NES08479131	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C		C	T	C	C		T	C	C	T		C
ss38800095	mCV23532606	ABI	CRAMUS_MOUSE	f	SNP		C	C				C		T
ss132366903	ENSMUSSNP6645125	ENSEMBL	ENSEMBL_Sanger	f	SNP			C						T
ss323733879	CHEV_11_69979805	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs26936898					SNP	C	C	C	C	C	C	C	C	T	C	C	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37166339	NES08479131	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70057129 () rs orientation: forward

Symbol	Name	Function Class
Clec10a	C-type lectin domain family 10, member A	320 bp upstream
Rr251315	regulatory region 251315	within coordinates
Tssr102659	transcription start site region 102659	345 bp upstream
Tssr102660	transcription start site region 102660	393 bp upstream
Tssr102661	transcription start site region 102661	463 bp upstream
Tssr102662	transcription start site region 102662	881 bp upstream
Tssr102663	transcription start site region 102663	899 bp upstream