rs26936904 SNP Detail

Summary

• ID
  rs26936904
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70056291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTCATGTT AGCGACTGGC
  TTTCATTGTA GCAATCTTTT GGAATGATTA TCTTTCAGAG AGCTGAGGTG TTGAGGGCTA
  TGGCAACTTA ACTACTGAAG TGATAGTGAC AGGTATGAAC CTCTCTGGTA CTCAGGCTAC
  CTTGAGGGGA GGACGAGCAG AAGCCACATA GTGACCAGAG CTGTTTATTA ACTCCAGTTA
  W
  CGGAGGCAAG CAAGACTCAA AGAGCTTGTG CCACATTTCT TGTCATCTTA AGCCCTAGTG
  AACCCTTGTA GCCATTTCAC CCTATCAGCG GGAGAACATG TCCACAGGTG GCTCAGAAGA
  CAGCATGTGA TTGGTGCAAA TCCAGCCTGC TGTTGGCAAT AAGGAACATG TGATTGGCAA
  AACTACCTTT GCTATGCCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37166345	NES08479125	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26936904					SNP	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37166345	NES08479125	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70056291 () rs orientation: forward

Symbol	Name	Function Class
Clec10a	C-type lectin domain family 10, member A	1158 bp upstream
Rr251315	regulatory region 251315	592 bp proximal
Tssr102659	transcription start site region 102659	1183 bp upstream
Tssr102660	transcription start site region 102660	1231 bp upstream
Tssr102661	transcription start site region 102661	1301 bp upstream
Tssr102662	transcription start site region 102662	1719 bp upstream
Tssr102663	transcription start site region 102663	1737 bp upstream