GAGGAGGAAA TCGAGGCAGA GCGGGCCTCC AGGGCCAAAG CAGAGAAGCA GCGCTCTGAC CTCTCCCGGG AACTGGAGGA GATCAGCGAG AGGCTGGAAG AAGCCGGCGG GGCCACCTCT GCTCAGGTGG AGATGAACAA GAAGCGGGAA ACTGAGTTTC AGAAACTTCG CCGGGACCTG GAGGAGGCCA CGCTGCAGCA Y GAAGCCACAG CAGCCGCTCT TCGGAAGAAG CACGCGGACA GTGTGGCTGA GCTCGGGGAG CAGATCGACA ACCTGCAGCG GGTGAAGCAG AAGCTGGAGA AGGAGAAGAG CGAGCTGAAG ATGGAGATCG ATGACCTTAG CAGTAATGCA GAGGCCATCG CCAAAGCCAA GGTAACAAAC ACTGTCTTTA TATAGGGTAC Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
DBA/2J |
FVB/NJ |
NOD/ShiLtJ |
NZW/LacJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss37172375 | NES08483656 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | C | T | C | C | C | C | C | C | |
ss132327419 | ENSMUSSNP354994 | ENSEMBL | ENSEMBL_Sanger | f | SNP | T | T | C | ||||||||
SNP Consensus Information | ||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
DBA/2J |
FVB/NJ |
NOD/ShiLtJ |
NZW/LacJ |
WSB/EiJ |
||||
rs26937544 | SNP | T | T | T | C | T | C | C | C | C | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss37172375 | NES08483656 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr11:67189389 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi3068 | CpG island 3068 | within coordinates | ||||||
Myh8 | myosin, heavy polypeptide 8, skeletal muscle, perinatal | within coordinates | ||||||
Tssr102227 | transcription start site region 102227 | 83 bp downstream | ||||||
Tssr102228 | transcription start site region 102228 | 764 bp upstream | ||||||
Tssr108547 | transcription start site region 108547 | 812 bp upstream | ||||||
Tssr108548 | transcription start site region 108548 | 30 bp upstream | ||||||
Tssr108549 | transcription start site region 108549 | 759 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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