rs26939366 SNP Detail

Summary

• ID
  rs26939366
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:63970466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCGCCATC TTGCTAGCCC
  GCCCTCTGAG TGAGGCGGGA CTTCCTCTTG TCACTTCCGG CTCCCAGCGC TCTCTGAAAG
  CTAGGCTAGC GGAGCTTATA AAGATCGGAT GGTAGAGCTT TCGCTTTCCC CTCAGACGCT
  CCAGATGTAG ACTAGGTGAG CTCTCTGCCC GGGAGGGACA GATCGTCGGA GCCCGCGGGC
  R
  GAAGGCGAGT CGTGGCGGGG TTAGGGCTCT GGAGTCCGGC CCGGCCCGGC AGTCCCCTGA
  GCTTGAAAGA ATTGAATGCC TCCTCAGTTG TCACCCAGGC TGATCTTGCG CAGGCTGTTG
  GCTTCTCGTG GAGTTTGGTA AGTAAAAAAA CGAGGAAGAA AGAAACTCAT TAAAAGAGCA
  AAACATGACT TACAAGGGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37182487	NES08415546	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs26939366					SNP	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37182487	NES08415546	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:63970466 () rs orientation: forward

Symbol	Name	Function Class
2810001G20Rik	RIKEN cDNA 2810001G20 gene	within coordinates
Cox10	heme A:farnesyltransferase cytochrome c oxidase assembly factor 10	172 bp upstream
Cpgi3048	CpG island 3048	within coordinates
Gm71991	predicted gene, 71991	within coordinates
Rr246948	regulatory region 246948	within coordinates
Tssr102116	transcription start site region 102116	113 bp downstream
Tssr102117	transcription start site region 102117	66 bp downstream
Tssr102118	transcription start site region 102118	16 bp downstream
Tssr108456	transcription start site region 108456	160 bp upstream