rs26939368 SNP Detail

Summary

• ID
  rs26939368
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:63970352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTACAATAC CTGTGAGGAG
  GCGCGAGGAA ATGGTGTGCG GGGACGCGGC CATAACGTAC TGGTGCAGCA GTCCCCAGGA
  CCCCAGGACG CCTCTCACCT CACCGGCTCC TGGGCGCCGC CATCTTGCTA GCCCGCCCTC
  TGAGTGAGGC GGGACTTCCT CTTGTCACTT CCGGCTCCCA GCGCTCTCTG AAAGCTAGGC
  Y
  AGCGGAGCTT ATAAAGATCG GATGGTAGAG CTTTCGCTTT CCCCTCAGAC GCTCCAGATG
  TAGACTAGGT GAGCTCTCTG CCCGGGAGGG ACAGATCGTC GGAGCCCGCG GGCGGAAGGC
  GAGTCGTGGC GGGGTTAGGG CTCTGGAGTC CGGCCCGGCC CGGCAGTCCC CTGAGCTTGA
  AAGAATTGAA TGCCTCCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss37182489	NES08415544	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs26939368					SNP	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37182489	NES08415544	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:63970352 () rs orientation: forward

Symbol	Name	Function Class
2810001G20Rik	RIKEN cDNA 2810001G20 gene	within coordinates
Cox10	heme A:farnesyltransferase cytochrome c oxidase assembly factor 10	58 bp upstream
Cpgi3048	CpG island 3048	within coordinates
Gm71991	predicted gene, 71991	7 bp downstream
Rr246948	regulatory region 246948	within coordinates
Tssr102116	transcription start site region 102116	within coordinates
Tssr102117	transcription start site region 102117	21 bp upstream
Tssr102118	transcription start site region 102118	87 bp upstream
Tssr108456	transcription start site region 108456	46 bp upstream