rs26943516 SNP Detail

Summary

• ID
  rs26943516
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53871134 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCGGCCGTG CAGTCCTGAG
  GCGAACCGTG GGGTGGGCGC GGCAGGAGTC TGAGTGATCC GTAGTGGGCA CTGGACGCGC
  CTGTACGTGA GGCGGGTCTG GTCCCGGTCT CCGAGCTGGC TGGACAGTGC GGAAGCGGGA
  TGGAGCCTGG CTTCAGAACT GCGCGGGTGT GAGGGAGCCT AGGAGTCCCT TGCCTACTAC
  W
  CTGAGCTGTT CGCTGAGGAA CGCCCTGAGG TAAAGTCCTT CCCAGTCGAG AGCAAGCGAG
  TCGGGCTGGG GGCGGGGCCG CTGTAGTCCC CGCCCCGAAG CTGCTGCTAG AGGGAGGGAC
  GGGTCTTCTC AAGCCACACC CCCCGAGCGA GTCGGGCTGG GGGCGGGGCC GCTGTAGTCC
  CCGCCCCGAA GCTGCTGCTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37208438	NES08438020	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	A	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26943516					SNP	T	T	T	T	T	T	T	T	T	A	A	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37208438	NES08438020	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53871134 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2880	CpG island 2880	within coordinates
Gm30927	predicted gene, 30927	within coordinates
Rr447213	regulatory region 447213	389 bp distal
Rr447214	regulatory region 447214	within coordinates
Rr447215	regulatory region 447215	14 bp proximal
Slc22a21	solute carrier family 22 (organic cation transporter), member 21	within coordinates
Tssr101464	transcription start site region 101464	272 bp downstream
Tssr101465	transcription start site region 101465	259 bp downstream
Tssr107965	transcription start site region 107965	368 bp upstream
Tssr107966	transcription start site region 107966	340 bp upstream
Tssr107967	transcription start site region 107967	25 bp upstream
Tssr107968	transcription start site region 107968	within coordinates
Tssr107969	transcription start site region 107969	46 bp downstream