rs26943520 SNP Detail

Summary

• ID
  rs26943520
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53869679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAGCATGTC ACATCCCCCA GCTGAGTGAC TGAGAAATGT
  CAAAGTCACC CAAGAATAAA GTGTAAGGGA ATGAGGAATT AGGTTTCCAT CGCTCTTCAG
  R
  GTAACCTTAC ATGCCTTACC TAACCTCTTC AGTGATCTTG TCCCAGAATA CTGTGGAAAA
  GACTCCATAC CAACAAGTCA CCCTGGATAG ATCTGCAGAC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37208454	NES08438003	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	G	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs26943520					SNP	A	A	A	A	A	A	G	G	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37208454	NES08438003	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53869679 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2880	CpG island 2880	568 bp proximal
Gm30927	predicted gene, 30927	1178 bp upstream
Rr447212	regulatory region 447212	971 bp distal
Rr447213	regulatory region 447213	394 bp proximal
Rr447214	regulatory region 447214	1067 bp proximal
Rr447215	regulatory region 447215	1469 bp proximal
Slc22a21	solute carrier family 22 (organic cation transporter), member 21	within coordinates
Tssr101464	transcription start site region 101464	1172 bp upstream
Tssr101465	transcription start site region 101465	1191 bp upstream
Tssr107965	transcription start site region 107965	1034 bp downstream
Tssr107966	transcription start site region 107966	1096 bp downstream
Tssr107967	transcription start site region 107967	1418 bp downstream
Tssr107968	transcription start site region 107968	1443 bp downstream
Tssr107969	transcription start site region 107969	1501 bp downstream