rs26945174 SNP Detail

Summary

• ID
  rs26945174
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:55041609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTATATCTC GAGTTCATGT
  CATGTACTTT CAAAGACACA CCAAATAAGT AGCTGTAAGT TTTACGTAAA TGGCATTGTT
  AGGATTGGAT ATAAGATACC ACCATTGTTT GTCAGGGTTG AGGCATTCCC ATAATCCTCG
  CATTCAGAAA GCTGAAGCAG GAGAATTGCA AATTTGAGAC CAGTCTGGAT TCCAGAATGA
  R
  GCTTTGACTA GGGAAAAATC TATAAGTCTG AGTTTGGGGC AGTGAAAATG GAACACAGAG
  TAATCAGGTG ATCCTTTGTT TACAGGAAGA TCTATGTCTG TATGGGGAGA TGGACTGGGA
  TAGAGACAGG GCAGACAGAG GAGCATCCAT CCTCCTGGTG TCAGGGGTGT GCTCTTTGTG
  TTCAGTAGCT CAGGCTGGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37205594	NES08432523	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26945174					SNP	A	A	A	A	A	A	G	A	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37205594	NES08432523	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:55041609 () rs orientation: forward

Symbol	Name	Function Class
Gm31688	predicted gene, 31688	within coordinates
Slc36a3	solute carrier family 36 (proton/amino acid symporter), member 3	Intron
Tssr108046	transcription start site region 108046	896 bp downstream
Tssr108047	transcription start site region 108047	915 bp downstream
Tssr108048	transcription start site region 108048	920 bp downstream