rs26945175 SNP Detail

Summary

• ID
  rs26945175
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:55041551 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAATAAGTAG CTGTAAGTTT TACGTAAATG GCATTGTTAG
  GATTGGATAT AAGATACCAC CATTGTTTGT CAGGGTTGAG GCATTCCCAT AATCCTCGCA
  Y
  TCAGAAAGCT GAAGCAGGAG AATTGCAAAT TTGAGACCAG TCTGGATTCC AGAATGAAGC
  TTTGACTAGG GAAAAATCTA TAAGTCTGAG TTTGGGGCAG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37205595	NES08432522	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs26945175					SNP	T	T	T	T	T	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37205595	NES08432522	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:55041551 () rs orientation: forward

Symbol	Name	Function Class
Gm31688	predicted gene, 31688	within coordinates
Rr447513	regulatory region 447513	1950 bp distal
Slc36a3	solute carrier family 36 (proton/amino acid symporter), member 3	Intron
Tssr108046	transcription start site region 108046	954 bp downstream
Tssr108047	transcription start site region 108047	973 bp downstream
Tssr108048	transcription start site region 108048	978 bp downstream