rs26945177 SNP Detail

Summary

• ID
  rs26945177
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:55040941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATCAGGTG GAGACCCCCT
  CTGCTGCCAT AGGGCTTCCC TGGAAGAAGA CAAAAGGTTT CACAAGCCAC ACAGTAAATC
  CGACAGATAG AGTGCTCACA GATAGCACTG GCCTCACTTG TACCTGACCT TCTGGAAACA
  ATGAGGCATT ATGGGAAACC ATTGCATCTT GGGTAACAGC ATGTTGCCTT AGGTCACAGG
  R
  CCTTAGCACA CATAGGCTGG AGGATATACT GAGACATTTA GAAAAGTAAG CTTTCTAATT
  TTTCTTTAAA AAACAATACA TTGCTGTAAA GGAAGTGCCC GTGACCTATC CATGACAAAT
  AAGCACATTT GTGGCCATTG GGTGGCCATT CCTATTTGTG TCTAAGTGCC CAGGGTTTTT
  ACAAAAGTGC CTGGAGCACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37205597	NES08432542	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs26945177					SNP	A	A	A	A	A	A	G	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37205597	NES08432542	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:55040941 () rs orientation: forward

Symbol	Name	Function Class
Gm31688	predicted gene, 31688	within coordinates
Gm72992	predicted gene, 72992	1457 bp downstream
Rr447513	regulatory region 447513	1340 bp distal
Slc36a3	solute carrier family 36 (proton/amino acid symporter), member 3	Intron
Tssr108046	transcription start site region 108046	1564 bp downstream
Tssr108047	transcription start site region 108047	1583 bp downstream
Tssr108048	transcription start site region 108048	1588 bp downstream