rs26945179 SNP Detail

Summary

• ID
  rs26945179
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:55040525 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAATATAT GAATTATTTG
  CTGATCCTCT TCATTCCTTC ATACATTGAT GGAACCAATA TTCATTTGAA TGAATACATA
  CAGATCTCCA CAAATGGATA CACAGTGCAG ACTCATGCTA TGCCCTGGAT AAAACACAGA
  GCTTAAAGGC CATTACTACT ATGCATAGCA CTATGAGTAC TGAGTACTGT GTGCTCAGAG
  W
  GTGCTAGGTG CCAGGGTTCC GAGTCTTCGT CACACTTGTG TGGGCAGCTG CTGGCCAGGC
  TGGGAAGAAT GGGGGAGTCA ACAGCATGAG AACAGAGTCA AGGGTTACTA CCAAACTTCC
  TTGGTGGAGC AAGCAGGGGC TGGATTAAAC GGGTAGTGGC ACCCCTTCCA GCTGGAAAGA
  TGGGGTTCCT AGAGGAGGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
ss37205599	NES08432540	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
rs26945179					SNP	A	A	A	A	A	A	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37205599	NES08432540	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:55040525 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm31688	predicted gene, 31688			405 bp upstream
Gm72992	predicted gene, 72992			1041 bp downstream
Rr447512	regulatory region 447512			1600 bp distal
Rr447513	regulatory region 447513			924 bp distal
Slc36a3	solute carrier family 36 (proton/amino acid symporter), member 3			Intron
				mRNA-UTR
Tssr108046	transcription start site region 108046			1980 bp downstream
Tssr108047	transcription start site region 108047			1999 bp downstream