rs26945424 SNP Detail

Summary

• ID
  rs26945424
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53216269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCATTCAGG AGGCAGAGGT
  AAGCAGATTT CAGAATTCGG GGCCAGCCTG GTCTACAGAG TGAGTTCCAG GACAGCCAAG
  GCTACACAGA GAAACCCTGT CTCTCTAAAA ACAAAACAAA GTTAAGCTTT AAAGGGGATA
  AGAGGCTGTG GTGAGGAAAG GCAAAAGGCC CAGTTCAAGT CAGTTCTAGA AATTCATCTG
  Y
  GAGGGGTGAC ATTTGAAAAC AGACTAAAAG CCATAGAAAG GACTGAGTCA GCAGAGGATT
  TGGGGAAAGA TAGGAAATGG TATATTTGCT ATGAGTCTGT TAGAATTTGG GGGTGGGTTG
  GGCAGATTTA GAGACAGGAT TTGTCTGTGT AGCCCTGGCT GTCCTGGAAC TCACTCTGTA
  GACCAGGCTG ACCTCGAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37209658	NES08436277	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	C		C	T	T	C
ss323672289	CHEV_11_53138944	CHEVERUD	SCREENING_POP	f	SNP									C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs26945424					SNP	T	T	T	T	T	C	T	C	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37209658	NES08436277	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53216269 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2860	CpG island 2860	514 bp distal
Gm74485	predicted gene, 74485	797 bp upstream
Rr447001	regulatory region 447001	808 bp distal
Rr447002	regulatory region 447002	753 bp distal
Rr447003	regulatory region 447003	315 bp distal
Tssr101382	transcription start site region 101382	738 bp downstream
Tssr107917	transcription start site region 107917	830 bp upstream
Zcchc10	zinc finger, CCHC domain containing 10	within coordinates