rs26945427 SNP Detail

Summary

• ID
  rs26945427
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53215423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATCCTCTT GCCTCAGCCT
  CCAAAATCCT GGATTACAGG ATTTTTTTTT TTTAGGATTT TTTGAATACT ACAAAATTCC
  ACTGCATATG TATTACAGAC CCCTGGTTTG AGATCACCCT TCAAGACCCT ATTCATACTG
  AACACACAAG CCCACATTAG AAAAGACAAA CCAGCTAGTG GCCACCATTA GCCTCTTCTG
  R
  ATTGAGCCCG TCTGGCCCCG CCCAGGACCG CAGAGGTTTC TAAGGACCCG CCCACCGGTG
  CTAGTTTCCC AAAAACCCGT GCGGCAGACT CCAGCCGCTC CAAGATGGCG ACTCCCATGC
  ATCGGCTCAT AGCTCGAAGG AAAGCGTAAG TGAGATGCTT GTGGGGTGTG CAGGAGGGCT
  GGGGGCGTGC AGACGCCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37209661	NES08436339	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs26945427					SNP	A	A	A	A	A	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37209661	NES08436339	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53215423 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2860	CpG island 2860	within coordinates
Gm74485	predicted gene, 74485	within coordinates
Rr447001	regulatory region 447001	within coordinates
Rr447002	regulatory region 447002	39 bp proximal
Rr447003	regulatory region 447003	94 bp proximal
Tssr101382	transcription start site region 101382	78 bp upstream
Tssr107917	transcription start site region 107917	within coordinates
Zcchc10	zinc finger, CCHC domain containing 10	93 bp upstream