rs26947322 SNP Detail

Summary

• ID
  rs26947322
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:51897062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAACAGGAC AGCAAGAATG GGAAGAAGAA GAGCAGATAC
  TTGCTCTATG AGTTTCCTGT ATAGAATTAG AAAGAAGTGT GATTAAAGTG TAGTAAATTG
  S
  AAACAGAAAG TGTTTTAGTC TAAGAAGTCA AAACTTGGTT TGGGGGCTTG CTAGTATCAT
  GAGGCCGTTA AAGAGTCAGA GATGCCCTGA AGTCCAGAG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss37212641	NES08439598	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G		G	C	G	C		G	C	G
ss38803084	mCV22560717	ABI	CRAMUS_MOUSE	f	SNP	G	G				G		C
ss132125434	ENSMUSSNP5017794	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						C
ss323669670	CHEV_11_51819737	CHEVERUD	SCREENING_POP	f	SNP											C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs26947322					SNP	G	G	G	G	G	G	G	C	G	C	C	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37212641	NES08439598	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:51897062 () rs orientation: forward

Symbol	Name	Function Class
Cdkl3	cyclin dependent kinase like 3	within coordinates
Cpgi2847	CpG island 2847	1667 bp distal
Rr234349	regulatory region 234349	1339 bp proximal
Rr246700	regulatory region 246700	861 bp distal
Rr386068	regulatory region 386068	1191 bp downstream
Tssr101305	transcription start site region 101305	1924 bp downstream
Tssr101306	transcription start site region 101306	1900 bp downstream
Tssr101307	transcription start site region 101307	1869 bp downstream