rs26947325 SNP Detail

Summary

• ID
  rs26947325
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:51894803 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAATGGT GTTAGAAATA
  AGTCAGAGGA GTAGTGAACG CTGAGTATGT GGCTTACTAC CGAGCTAAGC CCTCTATCCA
  AAAACGATCT TGTCCCCGGT TTAAGGATTA TGTCGACTTT GAGGTCGAAA TCGGTTGCAT
  GGAATAGTAA CGAAGCACTG GCAAACTGTA GCCCCATAAG TGTTCCGTAG ATCCAATTAT
  Y
  TCCGTCAACC TCCTAGAACC GGGCACAAGT AAGGGACCAG TAACCACCCA GGTGACAAAA
  CGCTCTCTTG CCGGGCGAAA GCCTCCAGGC GTTCATTCTG CTATAAAATG CCCCGCTCTC
  CCTCATCCCC ACCCCCCACC CCCACCCCCA CCTGCAAGCA CGCGGGCCTC CTACGTCCCT
  CCCCCTTCCC CTTGGGTCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37212644	NES08439630	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs26947325					SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37212644	NES08439630	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:51894803 () rs orientation: forward

Symbol	Name	Function Class
Cdkl3	cyclin dependent kinase like 3	245 bp upstream
Cpgi2847	CpG island 2847	76 bp proximal
Rr246700	regulatory region 246700	within coordinates
Rr386068	regulatory region 386068	within coordinates
Tssr101304	transcription start site region 101304	215 bp upstream
Tssr101305	transcription start site region 101305	244 bp upstream
Tssr101306	transcription start site region 101306	337 bp upstream
Tssr101307	transcription start site region 101307	364 bp upstream