rs26947326 SNP Detail

Summary

• ID
  rs26947326
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:51894608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTAGGGC TGGATATGAT
  GGCACTCAGC ACAGCACTCT AAGCAGGCAG ATAATCTTGG GAGTTTGAGG CCAGCCTGGA
  AGTATACATT GTGAGTCCCA GGCTACCCGG AGCTATATAG TAGCCCTTGT CTCAAAACAA
  AAAGGGATCA CTAGTAGGTA GAAAGCAGTA GTAATTGGGA AACTGAAAAT GTGTACAGAA
  W
  TGGTGTTAGA AATAAGTCAG AGGAGTAGTG AACGCTGAGT ATGTGGCTTA CTACCGAGCT
  AAGCCCTCTA TCCAAAAACG ATCTTGTCCC CGGTTTAAGG ATTATGTCGA CTTTGAGGTC
  GAAATCGGTT GCATGGAATA GTAACGAAGC ACTGGCAAAC TGTAGCCCCA TAAGTGTTCC
  GTAGATCCAA TTATCTCCGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37212645	NES08439629	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs26947326					SNP	A	A	A	A	A	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37212645	NES08439629	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:51894608 () rs orientation: forward

Symbol	Name	Function Class
Cdkl3	cyclin dependent kinase like 3	440 bp upstream
Cpgi2847	CpG island 2847	271 bp proximal
Gm12204	predicted gene 12204	1870 bp downstream
Rr246700	regulatory region 246700	within coordinates
Rr386068	regulatory region 386068	within coordinates
Tssr101304	transcription start site region 101304	410 bp upstream
Tssr101305	transcription start site region 101305	439 bp upstream
Tssr101306	transcription start site region 101306	532 bp upstream
Tssr101307	transcription start site region 101307	559 bp upstream