rs26947327 SNP Detail

Summary

• ID
  rs26947327
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:51894377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCTGCGGGC TATTTAAAAG TACATCCCTA GGCGTCCTTG
  TACTTACTCA GCCTGTGGCA GAGTCCGGTG AATTATTTTG TTTTCCTAAA AAGTTTTGCG
  K
  TTCACACGTC ATGAGAAAAC TTTAAAAGTA CTGCTAGGGC TGGATATGAT GGCACTCAGC
  ACAGCACTCT AAGCAGGCAG ATAATCTTGG GAGTTTGAGG                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37212646	NES08439638	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs26947327					SNP	T	T	T	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37212646	NES08439638	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:51894377 () rs orientation: forward

Symbol	Name	Function Class
Cdkl3	cyclin dependent kinase like 3	671 bp upstream
Cpgi2847	CpG island 2847	502 bp proximal
Gm12204	predicted gene 12204	1639 bp downstream
Rr246699	regulatory region 246699	1776 bp distal
Rr246700	regulatory region 246700	within coordinates
Rr386068	regulatory region 386068	within coordinates
Tssr101304	transcription start site region 101304	641 bp upstream
Tssr101305	transcription start site region 101305	670 bp upstream
Tssr101306	transcription start site region 101306	763 bp upstream
Tssr101307	transcription start site region 101307	790 bp upstream