rs26947388 SNP Detail

Summary

• ID
  rs26947388
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:49735907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAGTTGGC TATAACACCA
  GTCTTGGATG TCTAGGGATT CTAATCTGAG GGGAAGCACT CATTAGTGTT CTTCAGGGAA
  ACTGCAACAA TGGTAGCCAG GCTGTGCTGG TTTTTAATAA TGCCAACTGC TGGCTCTGTT
  TTCTTTGGAG CTTCTAAAGC AGTGACGGGA AGAGCCGAGG TGAGGACAGG TGTGGACAGA
  M
  GCTCACAAAA AGAACCTTTC TCAAAGCAGC ACACTCAGGA ACTAGGAGAA TTTTGAGCAG
  GAATAAACCA TACTCCCCCT GGTGGCCAGC ATGGGGGTGG CCAAAGGAGG ACTCTGCTAG
  TTGGGCTTGG TCAACTCGAT TTAGTCCTAT CTGGGAAGAG AGACTTTTAA CTGAGACAAT
  GCCTCCCTAA GATTGGTCTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37217407	NES08442315	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26947388					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37217407	NES08442315	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:49735907 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2801	CpG island 2801	1165 bp proximal
Gm74054	predicted gene, 74054	within coordinates
Mapk9	mitogen-activated protein kinase 9	1671 bp upstream
Rr446291	regulatory region 446291	within coordinates
Rr446292	regulatory region 446292	63 bp distal
Rr446293	regulatory region 446293	69 bp proximal
Rr446294	regulatory region 446294	558 bp proximal
Rr446295	regulatory region 446295	1304 bp proximal
Rr446296	regulatory region 446296	1447 bp proximal
Rr446297	regulatory region 446297	1684 bp proximal
Tssr3485	transcription start site region 3485	1858 bp upstream
Tssr101198	transcription start site region 101198	1652 bp upstream
Tssr101199	transcription start site region 101199	1684 bp upstream
Tssr101200	transcription start site region 101200	1725 bp upstream
Tssr101201	transcription start site region 101201	1804 bp upstream