rs26947389 SNP Detail

Summary

• ID
  rs26947389
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:49735720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTGCACT CATTCAAAGC
  ACGGACTCCC GCCATTCCAC CCCACCCTGT CATTTCACCT CAGTATGTTC ACCATTATTT
  TGAAAAAAAA AAGAACAAAG AGCAGCGTCT GTAGAAAAAA ACAGAATCTG AATGGGAAAC
  TTACTGGGTA AACATACCCA TGATGATTTG TGGTTACTTA CTTTGCATTG AGTTGGCTAT
  R
  ACACCAGTCT TGGATGTCTA GGGATTCTAA TCTGAGGGGA AGCACTCATT AGTGTTCTTC
  AGGGAAACTG CAACAATGGT AGCCAGGCTG TGCTGGTTTT TAATAATGCC AACTGCTGGC
  TCTGTTTTCT TTGGAGCTTC TAAAGCAGTG ACGGGAAGAG CCGAGGTGAG GACAGGTGTG
  GACAGAAGCT CACAAAAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37217408	NES08442314	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26947389					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37217408	NES08442314	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:49735720 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2801	CpG island 2801	1352 bp proximal
Gm74054	predicted gene, 74054	within coordinates
Mapk9	mitogen-activated protein kinase 9	1858 bp upstream
Rr446291	regulatory region 446291	within coordinates
Rr446292	regulatory region 446292	103 bp proximal
Rr446293	regulatory region 446293	256 bp proximal
Rr446294	regulatory region 446294	745 bp proximal
Rr446295	regulatory region 446295	1491 bp proximal
Rr446296	regulatory region 446296	1634 bp proximal
Rr446297	regulatory region 446297	1871 bp proximal
Tssr101198	transcription start site region 101198	1839 bp upstream
Tssr101199	transcription start site region 101199	1871 bp upstream
Tssr101200	transcription start site region 101200	1912 bp upstream
Tssr101201	transcription start site region 101201	1991 bp upstream