rs26947515 SNP Detail

Summary

• ID
  rs26947515
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:49686352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTCCTGGG CATCCTTTGG
  CAACGTGTGT GAAAGGTTGC TTCAGGCGTT TCTGGACACT GAAATGAAAC AAATGTATAA
  GTTTTGTCAG ATTCAACCCG CCCCCCGCCC GCCCCCCCCC CCCGTTTGAG TTCTTGTAGA
  TCTTTAGCCA CCGGTGGCTT TAGAACCAGA CTTTAGCAAG AGACCTGAAA CTACTTGAGC
  W
  CCAGGGCTTT CCTTGCTGAG CCTCTCAGAT GGCCCTGCAT CTCCACCATC AACCACCTCA
  GCTTCCCACC CTGTTTCCTC CTGGCGTCTG CCTTTCTTCT GTGTCTTTCC AAGCTCTGGA
  GAACTGTCTC CTCCAACCCT TTGGAAGAGA TGGGGTTTGG GTTATAACCA ACCCGTCTCC
  TTTCTAGACT TTGGTATTGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37217534	NES08443340	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26947515					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37217534	NES08443340	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:49686352 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2800	CpG island 2800	506 bp distal
Gfpt2	glutamine fructose-6-phosphate transaminase 2	within coordinates
Gm36507	predicted gene, 36507	within coordinates
Rr446281	regulatory region 446281	1328 bp distal
Rr446282	regulatory region 446282	17 bp distal
Tssr101196	transcription start site region 101196	1341 bp downstream