rs26947520 SNP Detail

Summary

• ID
  rs26947520
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:49683511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCATAGCA GTCACCCCTG
  CCACTTTTCA TATGGAGACA CAAAATTACA ATAAAAGTGG AGGACAGATA TGCACTATGC
  AAGGACACGG GGATCCTGGT ATTTTGGTGC CAGTAGAAGG CCTGTTTCTT GTCCCCTTCT
  GTGGAGTTCT GCCCAGCCCA GGGCCTTCTC TACAGAGATG TCAGATGTCC AATTTCCTAT
  R
  TGACCACCAG CTTAGTGTCT GCCCCACCCA TTGTTTTGTA AGAGCCAGGA GGCTGGATCT
  GTCTTCATTC ATTAAGTTCC TATCACCAGG AGAGATGTGA AGTGCAGATT TGGGAATGAA
  TGATGAATGG GTAAATGAAT GAATGAGTGT CACCTTGCGT CGCTGAGGTG AAGGAGCAGT
  GCTGCTCCTG AGTCAGCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37217539	NES08443365	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26947520					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37217539	NES08443365	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:49683511 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2800	CpG island 2800	1383 bp proximal
Gfpt2	glutamine fructose-6-phosphate transaminase 2	1494 bp upstream
Gm36507	predicted gene, 36507	within coordinates
Rr446281	regulatory region 446281	1013 bp proximal
Rr446282	regulatory region 446282	1514 bp proximal
Tssr101196	transcription start site region 101196	1473 bp upstream