rs26947522 SNP Detail

Summary

• ID
  rs26947522
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:49683343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGAATCT GTTCTTTTCT
  GTTTCCTCTA TGTCTCCAAA TGCAGGAGGT TGTTGAGCAT GGTCACATAA AATCCCTGAC
  CAATCCTAGA GCCAGGTGAG TCCAGTGGCT ATGACTCTTC CAAAGGCTCC CAGGCCTACT
  GGTCCCAAAA GCAAAGGATG CCTCCAGGGG TCATAGCAGT CACCCCTGCC ACTTTTCATA
  Y
  GGAGACACAA AATTACAATA AAAGTGGAGG ACAGATATGC ACTATGCAAG GACACGGGGA
  TCCTGGTATT TTGGTGCCAG TAGAAGGCCT GTTTCTTGTC CCCTTCTGTG GAGTTCTGCC
  CAGCCCAGGG CCTTCTCTAC AGAGATGTCA GATGTCCAAT TTCCTATGTG ACCACCAGCT
  TAGTGTCTGC CCCACCCATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37217541	NES08443363	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26947522					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37217541	NES08443363	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:49683343 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2800	CpG island 2800	1551 bp proximal
Gfpt2	glutamine fructose-6-phosphate transaminase 2	1662 bp upstream
Gm36507	predicted gene, 36507	within coordinates
Rr446281	regulatory region 446281	1181 bp proximal
Rr446282	regulatory region 446282	1682 bp proximal
Tssr101196	transcription start site region 101196	1641 bp upstream