rs26950214 SNP Detail

Summary

• ID
  rs26950214
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:58112850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACGTTCAG AGTGGGTCTT
  CCAACCTTCA TGAACCAAGT CCAGAGACTC CTTCATAGAC ACGCCCAAAG GTCTCTTTGC
  ATAGTGATTC TAGATCCTGC CAACCTGCCA ACCAATATTA ACTACACAGG CACTCAGGGG
  ATCTAGGACT TTTATTGGTT AATAGTGGGA AGAAGGTTGG GTGTGGCTTA GTAGTACAAT
  R
  TTTTCCTAGC ACATGGAAGG CTATGGTTTT GATACCTAGA AAGAAACAAA ATCTGTTCTG
  AAATGGAAGG AAAATGCCAA TTATATTTGT TGAGAAAATA CAATTAAATT ATATTATTGG
  CACAGGCACT TCAAAAAAAG AATCACTTAA ATGTAAAAGG TGGGTTTACT GTATATGCTG
  TGGGTAAGGA TAGGATGGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37197540	NES08428764	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	G	G	G	A		G	G	A	G
ss132192047	ENSMUSSNP5374841	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26950214					SNP	G	G	G	G	G	G	G	G	G	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37197540	NES08428764	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58112850 () rs orientation: forward

Symbol	Name	Function Class
Irgm2	immunity-related GTPase family M member 2	mRNA-UTR
Rr447938	regulatory region 447938	1752 bp proximal
Tssr101708	transcription start site region 101708	1834 bp downstream
Tssr101709	transcription start site region 101709	1514 bp downstream
Tssr101710	transcription start site region 101710	1496 bp downstream
Tssr101711	transcription start site region 101711	1310 bp downstream
Tssr101712	transcription start site region 101712	1269 bp downstream
Tssr101713	transcription start site region 101713	950 bp downstream
Tssr101714	transcription start site region 101714	909 bp downstream