rs26950222 SNP Detail

Summary

• ID
  rs26950222
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:58111147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCACCCCA TGTTCCTGGT
  ATCTGTCTTT AAGCCTGAAT CACATGACTT CCCAAAGCTT AGGGAGACAC TACAAAAAGA
  CCTCCCTGTC ATCAAGTACC ACGGCCTCGT CGAAACCCTT TACCAAGTCT GTGAGAAAAC
  TGTTAATGAG AGAGTAGAGT CCATTAAAAA GAGTATAGAT GAAGATAACC TACACACAGA
  K
  TTTGGGATCT CGGATCCGGG TAACGCGATA GAGATTCGGA AAGCCTTCCA AAAAACCTTT
  GGTTTGGATG ACATATCTCT CCACCTGGTT GCTCTGGAAA TGAAAAATAA ACATTTCAAC
  ACTAGTATGG AGTCCCAGGA GACCCAGAGG TACCAACAAG ATGACTGGGT GCTGGCTCGG
  TTGTATCGCA CTGGAACCCG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37197550	NES08428836	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26950222					SNP	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37197550	NES08428836	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58111147 () rs orientation: forward

Symbol	Name	Function Class
Irgm2	immunity-related GTPase family M member 2	Coding-NonSynonymous
Tssr101708	transcription start site region 101708	131 bp downstream
Tssr101709	transcription start site region 101709	160 bp upstream
Tssr101710	transcription start site region 101710	195 bp upstream
Tssr101711	transcription start site region 101711	356 bp upstream
Tssr101712	transcription start site region 101712	410 bp upstream
Tssr101713	transcription start site region 101713	728 bp upstream
Tssr101714	transcription start site region 101714	777 bp upstream