rs26950223 SNP Detail

Summary

• ID
  rs26950223
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:58111048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGACAGGG ACCTCAGCAC
  AAGTACCTTC CCTGAACCCC AGCTACTGCA GAGTATCCAA AGGAATATCC GGGATAGTCT
  TCAGAAGGAG AAAGTGAAGG AGCACCCCAT GTTCCTGGTA TCTGTCTTTA AGCCTGAATC
  ACATGACTTC CCAAAGCTTA GGGAGACACT ACAAAAAGAC CTCCCTGTCA TCAAGTACCA
  Y
  GGCCTCGTCG AAACCCTTTA CCAAGTCTGT GAGAAAACTG TTAATGAGAG AGTAGAGTCC
  ATTAAAAAGA GTATAGATGA AGATAACCTA CACACAGAGT TTGGGATCTC GGATCCGGGT
  AACGCGATAG AGATTCGGAA AGCCTTCCAA AAAACCTTTG GTTTGGATGA CATATCTCTC
  CACCTGGTTG CTCTGGAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37197551	NES08428835	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26950223					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37197551	NES08428835	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58111048 () rs orientation: forward

Symbol	Name	Function Class
Irgm2	immunity-related GTPase family M member 2	Coding-Synonymous
Tssr101708	transcription start site region 101708	32 bp downstream
Tssr101709	transcription start site region 101709	259 bp upstream
Tssr101710	transcription start site region 101710	294 bp upstream
Tssr101711	transcription start site region 101711	455 bp upstream
Tssr101712	transcription start site region 101712	509 bp upstream
Tssr101713	transcription start site region 101713	827 bp upstream
Tssr101714	transcription start site region 101714	876 bp upstream