rs26954696 SNP Detail

Summary

• ID
  rs26954696
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:63882336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCGT GTGCCTGCCC TCCTCTAATC
  W
  TAAAGCTCGT GTACGCATCC TTCAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37182825	NES08416570	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	A	T	T	T	T	A	T		T	A	T		A
ss323707823	CHEV_11_63805012	CHEVERUD	SCREENING_POP	f	SNP											T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs26954696					SNP	T	T	T	A	T	T	T	T	A	T	T	T	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37182825	NES08416570	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:63882336 () rs orientation: forward

Symbol	Name	Function Class
Cox10	heme A:farnesyltransferase cytochrome c oxidase assembly factor 10	within coordinates
D11Mit339	DNA Segment, Chr 11, Massachusetts Institute of Technology 339	1427 bp proximal
Gm57391	predicted gene, 57391	1436 bp downstream
Rr449102	regulatory region 449102	1839 bp distal
Rr449103	regulatory region 449103	1594 bp distal
Rr449104	regulatory region 449104	418 bp proximal
Tssr102110	transcription start site region 102110	1810 bp downstream
Tssr102111	transcription start site region 102111	1781 bp downstream
Tssr102112	transcription start site region 102112	1767 bp downstream
Tssr102113	transcription start site region 102113	1738 bp downstream
Tssr102114	transcription start site region 102114	1709 bp downstream
Tssr102115	transcription start site region 102115	1627 bp downstream