rs26954699 SNP Detail

Summary

• ID
  rs26954699
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:63882000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGCT AACTGCATCT CAGAGCATTC
  Y
  CTTCCTTGTT CCTTGGCATG TGCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37182828	NES08416630	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	T	C	T	C		T	T		T
ss323707820	CHEV_11_63804676	CHEVERUD	SCREENING_POP	f	SNP											T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs26954699					SNP	C	C	C	T	C	C	T	C	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37182828	NES08416630	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:63882000 () rs orientation: forward

Symbol	Name	Function Class
Cox10	heme A:farnesyltransferase cytochrome c oxidase assembly factor 10	within coordinates
D11Mit339	DNA Segment, Chr 11, Massachusetts Institute of Technology 339	1763 bp proximal
Gm57391	predicted gene, 57391	1100 bp downstream
Rr449102	regulatory region 449102	1503 bp distal
Rr449103	regulatory region 449103	1258 bp distal
Rr449104	regulatory region 449104	754 bp proximal
Tssr102110	transcription start site region 102110	1474 bp downstream
Tssr102111	transcription start site region 102111	1445 bp downstream
Tssr102112	transcription start site region 102112	1431 bp downstream
Tssr102113	transcription start site region 102113	1402 bp downstream
Tssr102114	transcription start site region 102114	1373 bp downstream
Tssr102115	transcription start site region 102115	1291 bp downstream