rs26954702 SNP Detail

Summary

• ID
  rs26954702
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:63881815 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCATGGGG GTGAGGTAGG
  GAGGTGGGAT GGGCAGCGTC CATCTGCGGA GGATAGGCAC TCCACACAGC AGGCAGAGGC
  TTGGAAAGCA GCCGCCAGCC ACCCTAGCAT CAGCCTGGTT AGAGACACAG GGGGACTCCA
  GGGACTTCAA CACTAAAAAC TCAGCCCCCT ACCCCACCGC CTTCCTGCTC CTAGCTGTCA
  Y
  TGAGGTCATC TTCTGGGACT TGTAACACGT CTCCATTTTT TCCCCTCTAG TGATCTTCAC
  CTCCTGAGGG ACCATTTTAG CTGAAACTTG GCCCCAGTGT CGCACATGTG ACTGCCTCTG
  GCTTCCCAGG TGAATCTAAG TCGGTTCTTG GAATGGGTTA TGCTAACTGC ATCTCAGAGC
  ATTCCCTTCC TTGTTCCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37182831	NES08416627	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs26954702					SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37182831	NES08416627	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:63881815 () rs orientation: forward

Symbol	Name	Function Class
Cox10	heme A:farnesyltransferase cytochrome c oxidase assembly factor 10	within coordinates
D11Mit339	DNA Segment, Chr 11, Massachusetts Institute of Technology 339	1948 bp proximal
Gm57391	predicted gene, 57391	915 bp downstream
Rr449102	regulatory region 449102	1318 bp distal
Rr449103	regulatory region 449103	1073 bp distal
Rr449104	regulatory region 449104	939 bp proximal
Tssr102110	transcription start site region 102110	1289 bp downstream
Tssr102111	transcription start site region 102111	1260 bp downstream
Tssr102112	transcription start site region 102112	1246 bp downstream
Tssr102113	transcription start site region 102113	1217 bp downstream
Tssr102114	transcription start site region 102114	1188 bp downstream
Tssr102115	transcription start site region 102115	1106 bp downstream