rs26954709 SNP Detail

Summary

• ID
  rs26954709
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:63881127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGAATTAAC TTACTATTCC
  TTAGTTATCA ACTACAGCCA CCATCATCTC CTGCCCCCGT GTAAACAAGC TGTACAAAAG
  GCAGCGATTA TAAGGACCGG CGAGCAGCCT GGGCTGCTAA GGCTGTCTCA GGCTGGATAC
  CCTTTAATCT TAAAACATGT GGAGCAGAGC CCTAAATGTA TTCAGTTTAT GTAGGTCAGC
  Y
  CTAAGGGGAA ACATATTAGA CTCTACATTA TCCCTCACAG TCCCCTCAAG TCATCCATAA
  AGGACATGCA GGATTATGTC CACACACGTC TAGGGAACAG TGGCTGTGCT CGCTCAAGTT
  GGAGAATGGC CTAGTGAGAT TGCAAGGGGA ATAACAAGGC CGCAGTGGCT CAGCACTGAA
  AGCATTTGGC CAGCAGGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37182838	NES08416620	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs26954709					SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37182838	NES08416620	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:63881127 () rs orientation: forward

Symbol	Name	Function Class
Cox10	heme A:farnesyltransferase cytochrome c oxidase assembly factor 10	within coordinates
Gm57391	predicted gene, 57391	227 bp downstream
Rr449102	regulatory region 449102	630 bp distal
Rr449103	regulatory region 449103	385 bp distal
Rr449104	regulatory region 449104	1627 bp proximal
Tssr102110	transcription start site region 102110	601 bp downstream
Tssr102111	transcription start site region 102111	572 bp downstream
Tssr102112	transcription start site region 102112	558 bp downstream
Tssr102113	transcription start site region 102113	529 bp downstream
Tssr102114	transcription start site region 102114	500 bp downstream
Tssr102115	transcription start site region 102115	418 bp downstream