rs26954710 SNP Detail

Summary

• ID
  rs26954710
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:63881065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAAATAAA GAAAATTTCA
  ATGTTTAAAA TATAAAGAGT ATATTTTCAT TATTTAAAAA AAGCGAATTA ACTTACTATT
  CCTTAGTTAT CAACTACAGC CACCATCATC TCCTGCCCCC GTGTAAACAA GCTGTACAAA
  AGGCAGCGAT TATAAGGACC GGCGAGCAGC CTGGGCTGCT AAGGCTGTCT CAGGCTGGAT
  R
  CCCTTTAATC TTAAAACATG TGGAGCAGAG CCCTAAATGT ATTCAGTTTA TGTAGGTCAG
  CCCTAAGGGG AAACATATTA GACTCTACAT TATCCCTCAC AGTCCCCTCA AGTCATCCAT
  AAAGGACATG CAGGATTATG TCCACACACG TCTAGGGAAC AGTGGCTGTG CTCGCTCAAG
  TTGGAGAATG GCCTAGTGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37182839	NES08416619	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs26954710					SNP	A	A	A	A	A	A	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37182839	NES08416619	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:63881065 () rs orientation: forward

Symbol	Name	Function Class
Cox10	heme A:farnesyltransferase cytochrome c oxidase assembly factor 10	within coordinates
Gm57391	predicted gene, 57391	165 bp downstream
Rr449102	regulatory region 449102	568 bp distal
Rr449103	regulatory region 449103	323 bp distal
Rr449104	regulatory region 449104	1689 bp proximal
Tssr102110	transcription start site region 102110	539 bp downstream
Tssr102111	transcription start site region 102111	510 bp downstream
Tssr102112	transcription start site region 102112	496 bp downstream
Tssr102113	transcription start site region 102113	467 bp downstream
Tssr102114	transcription start site region 102114	438 bp downstream
Tssr102115	transcription start site region 102115	356 bp downstream