rs26954713 SNP Detail

Summary

• ID
  rs26954713
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:63880329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTGGCTCC CACGCCACTG
  AAGAGCCTGA TAAATCATCC TGCCACAAAG GACCCAGAGT TGAAGGAAAA GCAGAAAGCC
  ACAGGGTCAA GTGTTTCCAC AGGAAAGACA CTGGTAACCA GCAGTAAAGC TGTTTCCATT
  AAGTATCTGT GCTGTTGTAA GGTGGTCCAG GATACACACA CGAATGACAA AGAACCATGG
  Y
  CGTATGTTTT AGGATGAGTC CGGGCACCCA TCTTAACATA AGGACACCGT TTCTTTCACT
  AGTGCAGGAA ATGATGGAAG CAGTGTTTTT CAAATGGGGT AAGATTAAAA ATTGTTTTTT
  TTTTTTTTTT TTTTTTTTTT AAATTGTAAG TGACAACAGC ATAACAAAGG AAGTGGCTTT
  TCTGGTGCCA GGAAACACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37182842	NES08416616	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs26954713					SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37182842	NES08416616	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:63880329 () rs orientation: forward

Symbol	Name	Function Class
Cox10	heme A:farnesyltransferase cytochrome c oxidase assembly factor 10	within coordinates
Gm57391	predicted gene, 57391	158 bp upstream
Rr449102	regulatory region 449102	within coordinates
Rr449103	regulatory region 449103	169 bp proximal
Tssr102110	transcription start site region 102110	188 bp upstream
Tssr102111	transcription start site region 102111	204 bp upstream
Tssr102112	transcription start site region 102112	237 bp upstream
Tssr102113	transcription start site region 102113	264 bp upstream
Tssr102114	transcription start site region 102114	290 bp upstream
Tssr102115	transcription start site region 102115	371 bp upstream