rs26954715 SNP Detail

Summary

• ID
  rs26954715
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:63880142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAC TGTCATATGG TGGCTCCCAC
  R
  CCACTGAAGA GCCTGATAAA TCATC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss37182844	NES08416614	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G	A	G		A		A
ss323707810	CHEV_11_63802818	CHEVERUD	SCREENING_POP	f	SNP										A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs26954715					SNP	G	G	G	A	G	G	G	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37182844	NES08416614	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:63880142 () rs orientation: forward

Symbol	Name	Function Class
Cox10	heme A:farnesyltransferase cytochrome c oxidase assembly factor 10	within coordinates
Gm57391	predicted gene, 57391	345 bp upstream
Rr449102	regulatory region 449102	within coordinates
Rr449103	regulatory region 449103	356 bp proximal
Tssr102110	transcription start site region 102110	375 bp upstream
Tssr102111	transcription start site region 102111	391 bp upstream
Tssr102112	transcription start site region 102112	424 bp upstream
Tssr102113	transcription start site region 102113	451 bp upstream
Tssr102114	transcription start site region 102114	477 bp upstream
Tssr102115	transcription start site region 102115	558 bp upstream