rs26954717 SNP Detail

Summary

• ID
  rs26954717
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:63879979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGAAAAG ATCTAGTGAG
  AATATGCAAA CAACAGGACA CCAGAGCCCC AGAAAGCCTC AGAAGCAAAC CATCTCTTAA
  CTTTGTACAT AACAAATCCC TATTGGCAAT AGGAGTGGTC AGTCTGAAGC CAGGGATCAC
  ATGTTCCCAG GAGAACAGCT CTGGCTCCAA TAGGGCTACG CTCCTGCAGA TGACAGCAGG
  R
  TTAAGACAGC TCCATTACCA AGCCCCTGGA GCACTTCTCT GCAGACTTCC TTCCAGGCAG
  ATACAAGAGC TCTTTAGCCA AGAGCACTGT GGCTCCAGGA GACCTCCCGT GCATCTGGGC
  CCTTCCTGAG TGATATGCTC ACTGTCATAT GGTGGCTCCC ACGCCACTGA AGAGCCTGAT
  AAATCATCCT GCCACAAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37182846	NES08416612	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs26954717					SNP	G	G	G	G	G	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37182846	NES08416612	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:63879979 () rs orientation: forward

Symbol	Name	Function Class
Cox10	heme A:farnesyltransferase cytochrome c oxidase assembly factor 10	within coordinates
Gm57391	predicted gene, 57391	508 bp upstream
Rr449102	regulatory region 449102	18 bp proximal
Rr449103	regulatory region 449103	519 bp proximal
Tssr102110	transcription start site region 102110	538 bp upstream
Tssr102111	transcription start site region 102111	554 bp upstream
Tssr102112	transcription start site region 102112	587 bp upstream
Tssr102113	transcription start site region 102113	614 bp upstream
Tssr102114	transcription start site region 102114	640 bp upstream
Tssr102115	transcription start site region 102115	721 bp upstream