rs26954721 SNP Detail

Summary

• ID
  rs26954721
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:63879581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATAGAAGA CACCCTGTCT
  AAGTGTTAAG CCAGAGAAGA GACCAGGGGT GGCATGTCTG GAAAGTCCTG GGAGAAGCCT
  TTGGGTGAGT CTGGCAGAAT GACCTGCTCT CAGCAGGGCT GGGCAGAGCC TGGAGGACTA
  GTTAGTGCTC CCAACAACTC CTCAAGAGCA ACTGCTCGTT CTTATCCTTA TAGTACACAA
  Y
  TGCTTGTTCT TATCCTTAAA GTAACTAAAG TAAATATTGG GGAAAAAATT CTGGGACTAT
  TCATGTCAAA CCATTCCTCC AGGCATCTTT GGACTACTAA ATCCATTTTA TCCTATTAGG
  AATAATGTGC AGGAAGATGG GAACCTCACC ACGTAGAAAG TTCAATAACA CTGCACAGTT
  GTGTAACATA AGGGGTAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37182850	NES08416608	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs26954721					SNP	T	T	T	T	T	C	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37182850	NES08416608	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:63879581 () rs orientation: forward

Symbol	Name	Function Class
Cox10	heme A:farnesyltransferase cytochrome c oxidase assembly factor 10	within coordinates
Gm57391	predicted gene, 57391	906 bp upstream
Rr449102	regulatory region 449102	416 bp proximal
Rr449103	regulatory region 449103	917 bp proximal
Tssr102110	transcription start site region 102110	936 bp upstream
Tssr102111	transcription start site region 102111	952 bp upstream
Tssr102112	transcription start site region 102112	985 bp upstream
Tssr102113	transcription start site region 102113	1012 bp upstream
Tssr102114	transcription start site region 102114	1038 bp upstream
Tssr102115	transcription start site region 102115	1119 bp upstream