rs26954724 SNP Detail

Summary

• ID
  rs26954724
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:63879240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGTTTAT TTTTCTTTTG
  CCCCAGGGAT CCAGGTCAGG GGTGAGCTAC CAGCTCACAC TTGGGCTGTG GAGGTTTTTC
  CTCAAAGCTT TGGACATGAG AGAACTAAAC TGAAGCCTGA GGGCTAAGGC TGAGATGGTC
  ACTTTGGGGA TGTGTGAATC TAAGTGAGAG AGGGATGCAG AAGGTTAGCG TTAGAGAGCA
  Y
  GGTGAAGTGC TATGCAGAGA GAGCTGAGGT GGCCAGGAGA CTGGAGGTCA GCTGCAAGCA
  GCAAGTACTA AGGGGGCGGG GCTCTCTCCA AAGAGGACAA ACAGAAGAGC CACTGTACAC
  AGCATGCAGG TGTCTATCTA GGATAGAAGA CACCCTGTCT AAGTGTTAAG CCAGAGAAGA
  GACCAGGGGT GGCATGTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss37182853	NES08416605	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs26954724					SNP	C	C	C	C	C	C	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37182853	NES08416605	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:63879240 () rs orientation: forward

Symbol	Name	Function Class
Cox10	heme A:farnesyltransferase cytochrome c oxidase assembly factor 10	within coordinates
Gm57391	predicted gene, 57391	1247 bp upstream
Rr449102	regulatory region 449102	757 bp proximal
Rr449103	regulatory region 449103	1258 bp proximal
Tssr102110	transcription start site region 102110	1277 bp upstream
Tssr102111	transcription start site region 102111	1293 bp upstream
Tssr102112	transcription start site region 102112	1326 bp upstream
Tssr102113	transcription start site region 102113	1353 bp upstream
Tssr102114	transcription start site region 102114	1379 bp upstream
Tssr102115	transcription start site region 102115	1460 bp upstream