rs26955941 SNP Detail

Summary

• ID
  rs26955941
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:65134713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTGGAGGT CAAACATCAG
  CTGGGTTACA TCTCGTCCAG TGTCTGTGTC ATGTGGCCTG AGTCACTTTG CAGAGCTCTG
  AAGCTTGAAG CAGAAACTGT GCCACCCCAA GCCTGTGCTG GCTGGTGACA TTGCCTTTGC
  CACTGGGCAC AGCAATTGCT TAGCCCTATT CCTGGGAGAC TTTTTGTTCT CCGAGTCTTC
  Y
  CTTCAGCTTG CTGTGGCCAC TGGTGACCCT CGAGATCCTG GCAAGCCCTG GATGATCCAC
  TGAAGCTAAA AATACCCTCA ACAGAGGGTT GCTTTTTGGC TCATCATTTT CTCCACTTCT
  GAAAACAGCA GGTGTTTGTA GAACTATCAG CTAAGCTGTA CTGGTTTTAA GTAGCTAAGG
  GGAGAGAGGA ATTCTTGGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37177864	NES08492545	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26955941					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37177864	NES08492545	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:65134713 () rs orientation: forward

Symbol	Name	Function Class
Myocd	myocardin	within coordinates
Rr251029	regulatory region 251029	within coordinates
Tssr108467	transcription start site region 108467	325 bp upstream
Tssr108468	transcription start site region 108468	284 bp upstream
Tssr108469	transcription start site region 108469	236 bp upstream
Tssr108470	transcription start site region 108470	219 bp upstream