rs26955942 SNP Detail

Summary

• ID
  rs26955942
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:65134537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTTTTTT TCTTTCCTTC
  TTTATCCTCT CATTGAGCCA CTATGGTCCT CTGAGGGTAA AGAATTGGCA GCTCGCTGCC
  TCTCATCTCC AGCCCAGGGC CACACCCAGG ATGAGCATGC CAGGGCCATC TCTCTGCCCC
  TGTGTGACTT CTCCTCCAGG TTTAGCAAAG CTGGAAGTCT GGAGGTCAAA CATCAGCTGG
  K
  TTACATCTCG TCCAGTGTCT GTGTCATGTG GCCTGAGTCA CTTTGCAGAG CTCTGAAGCT
  TGAAGCAGAA ACTGTGCCAC CCCAAGCCTG TGCTGGCTGG TGACATTGCC TTTGCCACTG
  GGCACAGCAA TTGCTTAGCC CTATTCCTGG GAGACTTTTT GTTCTCCGAG TCTTCTCTTC
  AGCTTGCTGT GGCCACTGGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37177865	NES08492544	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26955942					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37177865	NES08492544	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:65134537 () rs orientation: forward

Symbol	Name	Function Class
Myocd	myocardin	within coordinates
Rr251029	regulatory region 251029	within coordinates
Tssr108467	transcription start site region 108467	149 bp upstream
Tssr108468	transcription start site region 108468	108 bp upstream
Tssr108469	transcription start site region 108469	60 bp upstream
Tssr108470	transcription start site region 108470	43 bp upstream