rs26955948 SNP Detail

Summary

• ID
  rs26955948
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:65133533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTGCACA GTCTGTGCTT
  CTAGATTTCC GAATGGATGC TGCAGAGAAA ACTCACACTG TTTATCATTA ACACGGGAGT
  GAAGCTTTGG AGTTAGGCTG CTGCCTGCAA GCTCTTCCAT GTTTTGGTGG TGCTGACTGC
  GGTTAAAACC AGGGCCTGAT GCACTGACTG CTTTCTCCAG CACTTTAAAG TATGTATAGG
  R
  ATGAACCTAG AACTAGAGTG ATTTGGTCAC AGAAAATGCA AAACTTGAAA TCTTTTGGAT
  GGTAGATCTT GCTGAAGGTG GTTCTGATTT TCTTTTGACT ACAGTGTGTG CCTGGTCCTT
  GCTGGTCTGT TGTCTTTCTT TCTTTCTTTC TTTCTTTCTT TCTTTCTTTC TTTCTTTCTT
  TCTTTCTTTC TTTCTTTCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37177871	NES08492677	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G		G	G		A
ss323712865	CHEV_11_65056209	CHEVERUD	SCREENING_POP	f	SNP										G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs26955948					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37177871	NES08492677	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:65133533 () rs orientation: forward

Symbol	Name	Function Class
Myocd	myocardin	within coordinates
Rr251029	regulatory region 251029	722 bp proximal
Tssr108467	transcription start site region 108467	842 bp downstream
Tssr108468	transcription start site region 108468	863 bp downstream
Tssr108469	transcription start site region 108469	929 bp downstream
Tssr108470	transcription start site region 108470	949 bp downstream