rs26955956 SNP Detail

Summary

• ID
  rs26955956
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:65132537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCATGTATG TAACAGATGT GCAGCTTGGT CTCCGTGTGG
  GTCCTGAACA ACTGGAGCAG CCACAATCCC AAAAGCTGTT GCCTGCATGT GGGATATGTT
  Y
  TTCTAGCTAG GATGCCTTGT CTGGCCTCAG AGAGAGAGGA AACACCTAGT CTCAAAGAGA
  CTTGAAGTGC CAGATACCCA CGAGGCCCAC ACTCACTCAG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37177879	NES08492669	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26955956					SNP	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37177879	NES08492669	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:65132537 () rs orientation: forward

Symbol	Name	Function Class
Myocd	myocardin	within coordinates
Rr251029	regulatory region 251029	1718 bp proximal
Tssr108467	transcription start site region 108467	1838 bp downstream
Tssr108468	transcription start site region 108468	1859 bp downstream
Tssr108469	transcription start site region 108469	1925 bp downstream
Tssr108470	transcription start site region 108470	1945 bp downstream