rs26956110 SNP Detail

Summary

• ID
  rs26956110
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:61298889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTTGGTAC TTACTCTATT
  CTGTCGTGGT TGACGGTGAA AAAAAACCTA ACTTGACCCC GACGTGACTT GAACACGCAA
  CCTTCTGATC TGGAGTCAGA CGCGCTACCA TTGCGCCACG AGGTCACAGC AAGCTTGCGA
  CTCTGTGTCG CTAAAGGCCT CGCTTCACCG GCTCGCTCCT GGGCTCTGAG GTTCGGAACA
  K
  AGCGCTGTCG CTCGTCTGAG CAGAAGAGGA GTTCGGAATG CCGCAGCTCC GACAGGAACG
  GCGTCCGGGA GGATGCCAAG CTGACATTCG GCGACAGACA TTTGGCTCTT CCTCCTCCGT
  CTCTCGCGGT GACCCTCGGA GCACACAGTG CTGGGTGAAC ACTCACGGGA GAGGGGACGC
  CGGAGGGGAA CTGAGGGATG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss37189737	NES08423740	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs26956110					SNP	G	G	G	G	G	G	G	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37189737	NES08423740	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:61298889 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3009	CpG island 3009	within coordinates
Gm45605	predicted gene 45605	within coordinates
n-TWcca5	nuclear encoded tRNA trytophan 5 (anticodon CCA)	76 bp upstream
Rr402622	regulatory region 402622	within coordinates
Rr448632	regulatory region 448632	35 bp distal
Rr448633	regulatory region 448633	108 bp distal
Rr448634	regulatory region 448634	within coordinates
Rr448635	regulatory region 448635	1228 bp proximal
Rr448636	regulatory region 448636	1750 bp proximal