rs26956111 SNP Detail

Summary

• ID
  rs26956111
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:61298568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGAGCTG AGAAAAGTAA
  GTTCAAGGCA AACAAGGAGA GATCTATATT AAAGCACAAA GCTCTGTGTT GATTGCTCAC
  ACAAGCCCGG GTAACTGGAG GGAACATGGG TGGAATCCGA GGGTCGAACC AGGGCGTTAG
  AGGCTGAGTC AGCGCACCTT CCCCTTGATT CTGCTAGCAC CTCCTGTAGG TCATCACAAG
  Y
  CATCGCTTTC TCGAGCGAGC ATTCGGGTAT TCGTAGTCTC AAGAAAGGGA AAAAAGAGGG
  CTGTCTTATA TGGCGTGAGA AAGGCGATTT GATCCGATAC TGATCTCATT TCTTCTTTAT
  GACTTGGTAC TTACTCTATT CTGTCGTGGT TGACGGTGAA AAAAAACCTA ACTTGACCCC
  GACGTGACTT GAACACGCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37189738	NES08423751	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26956111					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37189738	NES08423751	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:61298568 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3009	CpG island 3009	within coordinates
Gm45605	predicted gene 45605	276 bp upstream
n-TWcca5	nuclear encoded tRNA trytophan 5 (anticodon CCA)	174 bp downstream
Rr402622	regulatory region 402622	88 bp upstream
Rr448632	regulatory region 448632	within coordinates
Rr448633	regulatory region 448633	192 bp proximal
Rr448634	regulatory region 448634	287 bp proximal
Rr448635	regulatory region 448635	1549 bp proximal