rs26956117 SNP Detail

Summary

• ID
  rs26956117
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:61297005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAACAGGTGG AGTGACCCAG ACCCCAAAGT CATATGTTAT
  GACCCCATGG AGATTACATT CTTTAGGTGA GAAAGAGCAG TTGAACAGAC CAGTCTCCAC
  Y
  TCTTACTCTC TAGATACGAT ACACCGTCCT AAAATCGGTG TGTAGAATCA TTTTTACAGT
  AAACTTTATT ATTTTGAAAA AATTAAAAAT AAAAACATCA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ
ss37189744	NES08423760	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ
rs26956117					SNP	T	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37189744	NES08423760	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:61297005 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3009	CpG island 3009	1441 bp proximal
Gm45605	predicted gene 45605	1839 bp upstream
n-TWcca5	nuclear encoded tRNA trytophan 5 (anticodon CCA)	1737 bp downstream
Rr402622	regulatory region 402622	1651 bp upstream
Rr448632	regulatory region 448632	1349 bp proximal
Rr448633	regulatory region 448633	1755 bp proximal
Rr448634	regulatory region 448634	1850 bp proximal