rs26956119 SNP Detail

Summary

• ID
  rs26956119
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:61296479 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAAGAGAG AGGGAGAAAA
  CAGGAAATGG GGCCAGAGTA TAAAACCTCA AAGCCAAACC AAATGGCATA CTTTCTCCAG
  TGAGGAACCA CCTCCTAAAG GCTCTATATC CTCCCCAAAC AGGGCCACCA ACGGGAGACC
  AACTGTTCAA GTGCATGAGC CTGTGGGAGA CATGTCTCAT TCAGGATGGG AGTCTCATAT
  Y
  ATGCTTAGGG CTGTTGACTT CTCCGGAGTG GGACTCGCAT GCTGTCAGGA CTAGCATGAG
  AAATCACCCT GTCTTTCAGT ACTTCCCCTT CCCCACTCTC GCTATTATCT TCCTCAGAGA
  AGCTATTTAG GATTAGATTC CTTCCTTCTA TTTTCATTAT CGTAACACTT CCTCAGACTT
  TCTATCTCCT CGTGTCTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37189746	NES08423763	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs26956119					SNP	T	T	T	T	T	T	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37189746	NES08423763	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:61296479 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3009	CpG island 3009	1967 bp proximal
Rr448632	regulatory region 448632	1875 bp proximal