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rs26957115 SNP Detail
Summary
  • ID
    rs26957115
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr11:60702815 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          AATAC CAAGATTCAG GCTAGCTGGC
    Y
    GTCTCAAATA TTAAAATGAG GCTGG                                      
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
ss37191841 NES08422381 PERLEGEN MM_PANEL2 f SNP T C T T T C T T T T T T T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
rs26957115 SNP T C T T T C T T T T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37191841 NES08422381 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:60702815 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi2996 CpG island 2996 606 bp distal
Gm74448 predicted gene, 74448 within coordinates
Rr402613 regulatory region 402613 523 bp downstream
Rr448486 regulatory region 448486 786 bp distal
Rr448487 regulatory region 448487 234 bp distal
Shmt1 serine hydroxymethyltransferase 1 (soluble) 753 bp upstream
Tssr108309 transcription start site region 108309 962 bp upstream
Tssr108310 transcription start site region 108310 779 bp upstream
Tssr108311 transcription start site region 108311 748 bp upstream
Tssr108312 transcription start site region 108312 719 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
07/22/2025
MGI 6.24
The Jackson Laboratory