AATAC CAAGATTCAG GCTAGCTGGC Y GTCTCAAATA TTAAAATGAG GCTGG Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss37191841 | NES08422381 | PERLEGEN | MM_PANEL2 | f | SNP | T | C | T | T | T | C | T | T | T | T | T | T | T |
SNP Consensus Information | ||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
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rs26957115 | SNP | T | C | T | T | T | C | T | T | T | T | T | T | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss37191841 | NES08422381 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr11:60702815 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi2996 | CpG island 2996 | 606 bp distal | ||||||
Gm74448 | predicted gene, 74448 | within coordinates | ||||||
Rr402613 | regulatory region 402613 | 523 bp downstream | ||||||
Rr448486 | regulatory region 448486 | 786 bp distal | ||||||
Rr448487 | regulatory region 448487 | 234 bp distal | ||||||
Shmt1 | serine hydroxymethyltransferase 1 (soluble) | 753 bp upstream | ||||||
Tssr108309 | transcription start site region 108309 | 962 bp upstream | ||||||
Tssr108310 | transcription start site region 108310 | 779 bp upstream | ||||||
Tssr108311 | transcription start site region 108311 | 748 bp upstream | ||||||
Tssr108312 | transcription start site region 108312 | 719 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 07/22/2025 MGI 6.24 |
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