rs26957117 SNP Detail

Summary

• ID
  rs26957117
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:60702297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAGAGCAGG GCAAAGCCTG ACGGAAAAAA AAAAAAAAAA
  AAAGAGCTCT GAACTGGAGG GGGTGGGAAG GAGGAGGGGA CTGGGCGGTT CCTTACCTTG
  S
  GACCTGGGAC TTTTGGGCAG TATTGCTGAT TGTAGGAGTG TTTTGTGATC CAGAAGACCT
  GGATAGGATT GGGGATCGAG CCTGGTTCGG GTTCAGTTTC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss37191843	NES08422385	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	C	C	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs26957117					SNP	G	G	G	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37191843	NES08422385	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:60702297 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2996	CpG island 2996	88 bp distal
Gm74448	predicted gene, 74448	within coordinates
Rr402613	regulatory region 402613	5 bp downstream
Rr448486	regulatory region 448486	268 bp distal
Rr448487	regulatory region 448487	within coordinates
Shmt1	serine hydroxymethyltransferase 1 (soluble)	235 bp upstream
Tssr108309	transcription start site region 108309	444 bp upstream
Tssr108310	transcription start site region 108310	261 bp upstream
Tssr108311	transcription start site region 108311	230 bp upstream
Tssr108312	transcription start site region 108312	201 bp upstream