rs26957119 SNP Detail

Summary

• ID
  rs26957119
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:60701345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGG TCCAGCAACT GCCTGGCTCA
  R
  TTAAACACAT TTGTGCTTGC TTCAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37191846	NES08422391	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A	A	G		G	A	A	A	A	A	A	A
ss46442171	mCV23023744	ABI	CRAMUS_MOUSE	f	SNP		A	G					A		A
ss132265200	ENSMUSSNP6872386	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs26957119					SNP	A	A	G	A	A	A	G	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37191846	NES08422391	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:60701345 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2996	CpG island 2996	371 bp proximal
Gm74448	predicted gene, 74448	674 bp upstream
Rr402613	regulatory region 402613	646 bp upstream
Rr448484	regulatory region 448484	1890 bp distal
Rr448485	regulatory region 448485	1503 bp distal
Rr448486	regulatory region 448486	184 bp proximal
Rr448487	regulatory region 448487	736 bp proximal
Shmt1	serine hydroxymethyltransferase 1 (soluble)	within coordinates
Tssr108307	transcription start site region 108307	1689 bp upstream
Tssr108308	transcription start site region 108308	1644 bp upstream
Tssr108309	transcription start site region 108309	505 bp downstream
Tssr108310	transcription start site region 108310	586 bp downstream
Tssr108311	transcription start site region 108311	709 bp downstream
Tssr108312	transcription start site region 108312	736 bp downstream