rs26957122 SNP Detail

Summary

• ID
  rs26957122
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:60700279 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGGT ACACGTGTTA CAACACACAG
  R
  AGGAAGTTCC TAGGGGTAAA GTCAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37191849	NES08422392	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A	G	G	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs26957122					SNP	A	G	A	A	A	G	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37191849	NES08422392	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:60700279 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2996	CpG island 2996	1437 bp proximal
Gm74448	predicted gene, 74448	1740 bp upstream
Rr402613	regulatory region 402613	1712 bp upstream
Rr448484	regulatory region 448484	824 bp distal
Rr448485	regulatory region 448485	437 bp distal
Rr448486	regulatory region 448486	1250 bp proximal
Rr448487	regulatory region 448487	1802 bp proximal
Shmt1	serine hydroxymethyltransferase 1 (soluble)	within coordinates
Tssr108307	transcription start site region 108307	623 bp upstream
Tssr108308	transcription start site region 108308	578 bp upstream
Tssr108309	transcription start site region 108309	1571 bp downstream
Tssr108310	transcription start site region 108310	1652 bp downstream
Tssr108311	transcription start site region 108311	1775 bp downstream
Tssr108312	transcription start site region 108312	1802 bp downstream